Haplomics report for proteomics at PDILT.

This report is generated by Quarto on June 10, 2025

Introduction

This report demonstrates results of the conducted analysis for proteomics at PDILT.

Minor allele frequency of variants

Figure 1. Allele frequency of the variants

Variants annotation plot

Figure 2. Number and annotation of the variants in each gene

Discriptive statistics

Minimum allele count (AC) is set to 5 . Given 13447 samples, variants with AC below 5 and above 13442 are removed., , , Of 169 variants, 100 left with minor allele count > 5 for building haplotypes., , , Merged data comprised 100 variants, 149 traits, and 13 covariates.,

Haplotype plot

Haplotype variants

Figure 3. Alleles distribution across haplotypes

Haplotype tagging variants

Figure 4. Haplotypes narrowed by varied variants

Associations with proteomics

Heatmap plot

Figure 5. Heatmap plot of the associations coefficients

Table of results